miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|55413527|gb|CV725903.1|CV725903 CAACGGCATGACAGTGTTTTTTTTTTTTTTTTTTACATGATACAAAAGCCTTACTAGTGTATTTCGAATCCATGAAACAG
AAGTTCCTCAAAAGCAGCCCCACCTAATTCTTCTTACAGTCACTAAATCCCCAACATCCATTTCCCATCATTGATGCACT
ACAGCTAGTTTTTTTTTTGATCAAACTAATATTACTACTAGCACAATAGCACCAGGTGTAGCCTAAGAGGAAGTGAACTT
GGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCAAGCTCGCCGGGGAGGACGAGGCGGACGGCGGTCTGGATCT
CCCGGGAGGTGATGGTGGGCTTCTTGTTGTAGCGGGCGAGCTTGGCGGCCTCGGCGGCGAGCTTCTCGAAGATGTCGTTG
ATGAAGGAGTTCATGATGGACATGGCCTTGGAGGAAATGCCGATGTCGGGGGGGACCTGCTTGA




Most similar to sp|Q9LGH8|H2B8_ORYSJ

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9LGH8|H2B8_ORYSJ Histone H2B.8 OS=Oryza sativa subsp. japonica
           GN=H2B.8 PE=3 SV=1
          Length = 153

 Score =  126 bits (316), Expect = 6e-29
 Identities = 68/79 (86%), Positives = 68/79 (86%)
 Frame = -3

Query: 462 KQVPPDIGISSKAMSIMNSFINDIFXXXXXXXXXXARYNKKPTITSREIQTAVRLVLPGE 283
           KQV PDIGISSKAMSIMNSFINDIF          ARYNKKPTITSREIQTAVRLVLPGE
Sbjct: 75  KQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTAVRLVLPGE 134

Query: 282 LAKHAVSEGTKAVTKFTSS 226
           LAKHAVSEGTKAVTKFTSS
Sbjct: 135 LAKHAVSEGTKAVTKFTSS 153